The only one I've run into is if I use window mode and the Multi-Mon option to lock cursor in main window, when the pre-game screen loads it only uses a small box of monitor real estate in the top left corner, but works fine when the game starts.
I just reinstalled last night using the [You must login to view link] version and when I signed into voobly it didn't auto-detect the game. This is no doubt because gog's default install path is C:\Gog Games\Star Wars... Pressing okay to run the autofix worked right away but I could see this potentially scaring people away who are not so tech savvy. Maybe someone could add this to the paths voobly searches by default? It might be a good idea to also add C:\Program Files\Lucas Arts\Star Wars... to the paths as well since I remember helping someone out when they (incorrectly) installed it there.
so i will forward to elusive to fix the issue..
http://www.voobly.com/pages/view/25
http://www.voobly.com/forum/thread/213315